Application of Microsatellite Loci for Molecular Identification of Elite Genotypes, Analysis of Clonality, and Genetic Diversity in Aspen Populus tremula L. (Salicaceae).
Identifieur interne : 001E93 ( Main/Exploration ); précédent : 001E92; suivant : 001E94Application of Microsatellite Loci for Molecular Identification of Elite Genotypes, Analysis of Clonality, and Genetic Diversity in Aspen Populus tremula L. (Salicaceae).
Auteurs : Dmitry V. Politov [Russie] ; Maryana M. Belokon [Russie] ; Yuri S. Belokon [Russie] ; Tatyana A. Polyakova [Russie] ; Anna V. Shatokhina [Russie] ; Elena A. Mudrik [Russie] ; Anna B. Azarova [Russie] ; Mikhail V. Filippov [Russie] ; Konstantin A. Shestibratov [Russie]Source :
- International journal of plant genomics [ 1687-5370 ] ; 2015.
Abstract
Testing systems for molecular identification of micropropagated elite aspen (Populus tremula L.) genotypes were developed on the base on microsatellite (SSR) loci. Out of 33 tested microsatellite loci, 14 were selected due to sustainable PCR amplification and substantial variability in elite clones of aspen aimed for establishment of fast-rotated forest plantations. All eight tested clones had different multilocus genotypes. Among 114 trees from three reference native stands located near the established plantations, 80 haplotypes were identified while some repeated genotypes were attributed to natural clones which appeared as a result of sprouting. The selected set of SSR markers showed reliable individual identification with low probability of appearance of identical aspen genotypes (a minimum of 4.8 · 10(-10) and 1 × 10(-4) for unrelated and related individuals, resp.). Case studies demonstrating practical applications of the test system are described including analysis of clonal structure and levels of genetic diversity in three natural aspen stands growing in the regions where plantations made of elite clones were established.
DOI: 10.1155/2015/261518
PubMed: 26823661
PubMed Central: PMC4707373
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(Salicaceae).</title><author><name sortKey="Politov, Dmitry V" sort="Politov, Dmitry V" uniqKey="Politov D" first="Dmitry V" last="Politov">Dmitry V. Politov</name><affiliation wicri:level="1"><nlm:affiliation>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991</wicri:regionArea><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName></affiliation></author><author><name sortKey="Belokon, Maryana M" sort="Belokon, Maryana M" uniqKey="Belokon M" first="Maryana M" last="Belokon">Maryana M. Belokon</name><affiliation wicri:level="1"><nlm:affiliation>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991</wicri:regionArea><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName></affiliation></author><author><name sortKey="Belokon, Yuri S" sort="Belokon, Yuri S" uniqKey="Belokon Y" first="Yuri S" last="Belokon">Yuri S. 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Polyakova</name><affiliation wicri:level="1"><nlm:affiliation>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991</wicri:regionArea><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName></affiliation></author><author><name sortKey="Shatokhina, Anna V" sort="Shatokhina, Anna V" uniqKey="Shatokhina A" first="Anna V" last="Shatokhina">Anna V. Shatokhina</name><affiliation wicri:level="1"><nlm:affiliation>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991</wicri:regionArea><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName></affiliation></author><author><name sortKey="Mudrik, Elena A" sort="Mudrik, Elena A" uniqKey="Mudrik E" first="Elena A" last="Mudrik">Elena A. Mudrik</name><affiliation wicri:level="1"><nlm:affiliation>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991</wicri:regionArea><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName></affiliation></author><author><name sortKey="Azarova, Anna B" sort="Azarova, Anna B" uniqKey="Azarova A" first="Anna B" last="Azarova">Anna B. Azarova</name><affiliation wicri:level="1"><nlm:affiliation>Shemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Pushchino Branch, Pushchino 142290, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Shemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Pushchino Branch, Pushchino 142290</wicri:regionArea><wicri:noRegion>Pushchino 142290</wicri:noRegion></affiliation></author><author><name sortKey="Filippov, Mikhail V" sort="Filippov, Mikhail V" uniqKey="Filippov M" first="Mikhail V" last="Filippov">Mikhail V. Filippov</name><affiliation wicri:level="1"><nlm:affiliation>Shemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Pushchino Branch, Pushchino 142290, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Shemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Pushchino Branch, Pushchino 142290</wicri:regionArea><wicri:noRegion>Pushchino 142290</wicri:noRegion></affiliation></author><author><name sortKey="Shestibratov, Konstantin A" sort="Shestibratov, Konstantin A" uniqKey="Shestibratov K" first="Konstantin A" last="Shestibratov">Konstantin A. Shestibratov</name><affiliation wicri:level="1"><nlm:affiliation>Shemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Pushchino Branch, Pushchino 142290, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Shemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Pushchino Branch, Pushchino 142290</wicri:regionArea><wicri:noRegion>Pushchino 142290</wicri:noRegion></affiliation></author></analytic><series><title level="j">International journal of plant genomics</title><idno type="ISSN">1687-5370</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Testing systems for molecular identification of micropropagated elite aspen (Populus tremula L.) genotypes were developed on the base on microsatellite (SSR) loci. Out of 33 tested microsatellite loci, 14 were selected due to sustainable PCR amplification and substantial variability in elite clones of aspen aimed for establishment of fast-rotated forest plantations. All eight tested clones had different multilocus genotypes. Among 114 trees from three reference native stands located near the established plantations, 80 haplotypes were identified while some repeated genotypes were attributed to natural clones which appeared as a result of sprouting. The selected set of SSR markers showed reliable individual identification with low probability of appearance of identical aspen genotypes (a minimum of 4.8 · 10(-10) and 1 × 10(-4) for unrelated and related individuals, resp.). Case studies demonstrating practical applications of the test system are described including analysis of clonal structure and levels of genetic diversity in three natural aspen stands growing in the regions where plantations made of elite clones were established. </div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">26823661</PMID><DateCompleted><Year>2016</Year><Month>01</Month><Day>29</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">1687-5370</ISSN><JournalIssue CitedMedium="Print"><Volume>2015</Volume><PubDate><Year>2015</Year></PubDate></JournalIssue><Title>International journal of plant genomics</Title><ISOAbbreviation>Int J Plant Genomics</ISOAbbreviation></Journal><ArticleTitle>Application of Microsatellite Loci for Molecular Identification of Elite Genotypes, Analysis of Clonality, and Genetic Diversity in Aspen Populus tremula L. (Salicaceae).</ArticleTitle><Pagination><MedlinePgn>261518</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1155/2015/261518</ELocationID><Abstract><AbstractText>Testing systems for molecular identification of micropropagated elite aspen (Populus tremula L.) genotypes were developed on the base on microsatellite (SSR) loci. Out of 33 tested microsatellite loci, 14 were selected due to sustainable PCR amplification and substantial variability in elite clones of aspen aimed for establishment of fast-rotated forest plantations. All eight tested clones had different multilocus genotypes. Among 114 trees from three reference native stands located near the established plantations, 80 haplotypes were identified while some repeated genotypes were attributed to natural clones which appeared as a result of sprouting. The selected set of SSR markers showed reliable individual identification with low probability of appearance of identical aspen genotypes (a minimum of 4.8 · 10(-10) and 1 × 10(-4) for unrelated and related individuals, resp.). Case studies demonstrating practical applications of the test system are described including analysis of clonal structure and levels of genetic diversity in three natural aspen stands growing in the regions where plantations made of elite clones were established. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Politov</LastName><ForeName>Dmitry V</ForeName><Initials>DV</Initials><AffiliationInfo><Affiliation>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Belokon</LastName><ForeName>Maryana M</ForeName><Initials>MM</Initials><AffiliationInfo><Affiliation>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Belokon</LastName><ForeName>Yuri S</ForeName><Initials>YS</Initials><AffiliationInfo><Affiliation>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Polyakova</LastName><ForeName>Tatyana A</ForeName><Initials>TA</Initials><AffiliationInfo><Affiliation>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shatokhina</LastName><ForeName>Anna V</ForeName><Initials>AV</Initials><AffiliationInfo><Affiliation>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mudrik</LastName><ForeName>Elena A</ForeName><Initials>EA</Initials><AffiliationInfo><Affiliation>Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkin Street 3, Moscow 119991, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Azarova</LastName><ForeName>Anna B</ForeName><Initials>AB</Initials><AffiliationInfo><Affiliation>Shemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Pushchino Branch, Pushchino 142290, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Filippov</LastName><ForeName>Mikhail V</ForeName><Initials>MV</Initials><AffiliationInfo><Affiliation>Shemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Pushchino Branch, Pushchino 142290, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shestibratov</LastName><ForeName>Konstantin A</ForeName><Initials>KA</Initials><AffiliationInfo><Affiliation>Shemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Pushchino Branch, Pushchino 142290, 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central</li></region><settlement><li>Moscou</li></settlement></list><tree><country name="Russie"><region name="District fédéral central"><name sortKey="Politov, Dmitry V" sort="Politov, Dmitry V" uniqKey="Politov D" first="Dmitry V" last="Politov">Dmitry V. Politov</name></region><name sortKey="Azarova, Anna B" sort="Azarova, Anna B" uniqKey="Azarova A" first="Anna B" last="Azarova">Anna B. Azarova</name><name sortKey="Belokon, Maryana M" sort="Belokon, Maryana M" uniqKey="Belokon M" first="Maryana M" last="Belokon">Maryana M. Belokon</name><name sortKey="Belokon, Yuri S" sort="Belokon, Yuri S" uniqKey="Belokon Y" first="Yuri S" last="Belokon">Yuri S. Belokon</name><name sortKey="Filippov, Mikhail V" sort="Filippov, Mikhail V" uniqKey="Filippov M" first="Mikhail V" last="Filippov">Mikhail V. Filippov</name><name sortKey="Mudrik, Elena A" sort="Mudrik, Elena A" uniqKey="Mudrik E" first="Elena A" last="Mudrik">Elena A. Mudrik</name><name sortKey="Polyakova, Tatyana A" sort="Polyakova, Tatyana A" uniqKey="Polyakova T" first="Tatyana A" last="Polyakova">Tatyana A. Polyakova</name><name sortKey="Shatokhina, Anna V" sort="Shatokhina, Anna V" uniqKey="Shatokhina A" first="Anna V" last="Shatokhina">Anna V. Shatokhina</name><name sortKey="Shestibratov, Konstantin A" sort="Shestibratov, Konstantin A" uniqKey="Shestibratov K" first="Konstantin A" last="Shestibratov">Konstantin A. Shestibratov</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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